About this course: World and internet is full of textual information. We search for information using textual queries, we read websites, books, e-mails. All those are strings from the point of view of computer science. To make sense of all that information and make search efficient, search engines use many string algorithms. Moreover, the emerging field of personalized medicine uses many search algorithms to find disease-causing mutations in the human genome.
Who is this class for: Programmers with basic experience looking to understand the practical and conceptual underpinnings of algorithms, with the goal of becoming more effective software engineers. Computer science students and researchers as well as interdisciplinary students (studying electrical engineering, mathematics, bioinformatics, etc.) aiming to get more profound understanding of algorithms and hands-on experience implementing them and applying for real-world problems. Applicants who want to prepare for an interview in a high-tech company.
Created by: University of California, San Diego, Higher School of Economics
Taught by: Alexander S. Kulikov, Visiting Professor
Department of Computer Science and Engineering
Taught by: Michael Levin, Lecturer
Computer Science
Taught by: Pavel Pevzner, Professor
Department of Computer Science and Engineering
Taught by: Neil Rhodes, Adjunct Faculty
Computer Science and Engineering
| Basic Info |
Course 4 of 6 in the
Data Structures and Algorithms Specialization.
|
| Level | Intermediate |
| Commitment | 4 weeks of study, 4-8 hours/week |
| Language | English |
| How To Pass | Pass all graded assignments to complete the course. |
| User Ratings |
Syllabus
WEEK 1
Suffix Trees
How would you search for a longest repeat in a string in LINEAR time? In 1973, Peter Weiner came up with a surprising solution that was based on suffix trees, the key data structure in pattern matching. Computer scientists were so impressed with his algorithm...
5 videos, 5 readings
Graded: Programming Assignment 1
WEEK 2
Burrows-Wheeler Transform and Suffix Arrays
Although EXACT pattern matching with suffix trees is fast, it is not clear how to use suffix trees for APPROXIMATE pattern matching. In 1994, Michael Burrows and David Wheeler invented an ingenious algorithm for text compression that is now known as Burrows-W...
5 videos, 4 readings
Graded: Programming Assignment 2
WEEK 3
Knuth–Morris–Pratt Algorithm
Congratulations, you have now learned the key pattern matching concepts: tries, suffix trees, suffix arrays and even the Burrows-Wheeler transform! However, some of the results Pavel mentioned remain mysterious: e.g., how can we perform exact pattern matching ...
5 videos, 2 readings
Graded: Exact Pattern Matching
WEEK 4
Constructing Suffix Arrays and Suffix Trees
In this module we continue studying algorithmic challenges of the string algorithms. You will learn an O(n log n) algorithm for suffix array construction and a linear time algorithm for construction of suffix tree from a suffix array. You will also implement t...
11 videos, 5 readings
Graded: Suffix Array Construction
Graded: Programming Assignment 3
FAQs
How It Works
Coursework
Each course is like an interactive textbook, featuring pre-recorded videos, quizzes and projects.
Help from Your Peers
Connect with thousands of other learners and debate ideas, discuss course material, and get help mastering concepts.
Certificates
Earn official recognition for your work, and share your success with friends, colleagues, and employers.
Creators
University of California, San Diego
UC San Diego is an academic powerhouse and economic engine, recognized as one of the top 10 public universities by U.S. News and World Report. Innovation is central to who we are and what we do. Here, students learn that knowledge isn't just acquired in the classroom—life is their laboratory.
Higher School of Economics
National Research University - Higher School of Economics (HSE) is one of the top research universities in Russia. Established in 1992 to promote new research and teaching in economics and related disciplines, it now offers programs at all levels of university education across an extraordinary range of fields of study including business, sociology, cultural studies, philosophy, political science, international relations, law, Asian studies, media and communications, IT, mathematics, engineering, and more.
Learn more on www.hse.ru
Pricing
| Audit | Purchase Course | |
|---|---|---|
| Access to course materials | Available | Available |
| Access to graded materials | Not available | Available |
| Receive a final grade | Not available | Available |
| Earn a shareable Course Certificate | Not available | Available |
Ratings and Reviews
Unfortunately the forums go inactive after the first few iterations of the course. One can still learn by doing the programming assignments
Great content! It gets a little complicated as there are too many notations to keep track of. Probably best to read and re-read a lot several times. Teaching is also very good. Looking forward to the next course.
thank you, course was good, highly recommended.
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Very nice course!