This course provides demonstrations and exercises for performing common genomics-based analysis tasks of bacterial sequence data. It uses PATRIC, the PathoSystems Resource Integration Center, as the platform for analysis. PATRIC is the NIH/NIAID-funded bacterial Bioinformatics Resource Center, providing comprehensive bacterial genomic data with integrated analysis tools and visualizations. PATRIC also provides a private workspace where users can upload and analyze their own data.
Offert par
Bacterial Bioinformatics
Université de VirginieÀ propos de ce cours
10 231 consultations récentes
Dates limites flexibles
Réinitialisez les dates limites selon votre disponibilité.
100 % en ligne
Commencez dès maintenant et apprenez aux horaires qui vous conviennent.
Niveau intermédiaire
This class is geared towards biologists, bacteriologists, and bioinformaticians with a basic knowledge of comparative genomics.
Approx. 14 heures pour terminer
Anglais
Sous-titres : Français, Portugais (européen), Russe, Anglais, Espagnol
Ce que vous allez apprendre
Learn how to assemble a bacterial genome
Learn how to annotate a bacterial genome
Learn how to generate a phylogenetic tree from a set of bacterial genomes
Learn how to perform basic comparative analyses of a set of bacterial genomes
Dates limites flexibles
Réinitialisez les dates limites selon votre disponibilité.
100 % en ligne
Commencez dès maintenant et apprenez aux horaires qui vous conviennent.
Niveau intermédiaire
This class is geared towards biologists, bacteriologists, and bioinformaticians with a basic knowledge of comparative genomics.
Approx. 14 heures pour terminer
Anglais
Sous-titres : Français, Portugais (européen), Russe, Anglais, Espagnol
Offert par
Université de Virginie
A premier institution of higher education, The University of Virginia offers outstanding academics, world-class faculty, and an inspiring, supportive environment. Founded by Thomas Jefferson in 1819, the University is guided by his vision of discovery, innovation, and development of the full potential of students from all walks of life. Through these courses, global learners have an opportunity to study with renowned scholars and thought leaders.
Programme de cours : ce que vous apprendrez dans ce cours
1 heure pour terminer
Introduction
This lesson provides an introduction to PATRIC, the PathoSystems Resource Integration Center, a Bioinformatics Resource Center dedicated to supporting bacterial research. PATRIC provides comprehensive bacterial genomic data with integrated analysis tools and visualizations. PATRIC also provides a private workspace where users can upload and analyze their own data. PATRIC will serve as the platform for the analysis methods covered in this module.
1 heure pour terminer
7 vidéos (Total 42 min)
1 heure pour terminer
Assembly
This lesson provides step-by-step instructions for assembling a genome from a set of bacterial sequence reads using the PATRIC Genome Assembly Service. Exercises are included to enhance comprehension and build proficiency in using the assembly process.
1 heure pour terminer
7 vidéos (Total 49 min)
2 heures pour terminer
Annotation
This lesson provides step-by-step instructions for annotating a genome from contigs using the PATRIC Genome Annotation Service. Exercises are included to enhance comprehension and build proficiency in using the annotation process.
2 heures pour terminer
7 vidéos (Total 77 min)
2 heures pour terminer
Comprehensive Genome Analysis
This lesson provides step-by-step instructions for assembling, annotating, and performing an automated analysis of a genome from a set of bacterial sequence reads using the PATRIC Comprehensive Genome Analysis Service. Exercises are included to enhance comprehension and build proficiency in using the service.
2 heures pour terminer
10 vidéos (Total 101 min)
Avis
- 5 stars78,37 %
- 4 stars13,51 %
- 3 stars5,40 %
- 1 star2,70 %
Meilleurs avis pour BACTERIAL BIOINFORMATICS
par PP23 déc. 2020
very useful course , can solve a lot of problem in bacterium genome analysis easily
par NG14 févr. 2022
it was very informative course and i enjoyed doing home works and assessments. thank you\n\nRegards\n\nNeeraja
par DR28 avr. 2022
It was great learning course. I learned so many new things from course
par GT4 févr. 2022
i appreciate the dedication and design of the course. it so practical and friendly. thank You Dr. Rebecca.
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